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PoroMedia Help.htm

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  312. content="PoroMedia&#13;Help&#13;Tortuosity&#13;SSA&#13;Random Walk&#13;Surface Structure">
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  320.  
  321. <body bgcolor=white lang=ZH-CN link=blue vlink=purple style='tab-interval:36.0pt'>
  322.  
  323. <div class=Section1>
  324.  
  325. <p class=MsoNormal align=center style='text-align:center'><b><u><span
  326. lang=EN-US style='font-size:20.0pt'>PoroMedia Help<o:p></o:p></span></u></b></p>
  327.  
  328. <p class=MsoNormal align=center style='text-align:center'><span lang=EN-US
  329. style='font-size:20.0pt'><o:p>&nbsp;</o:p></span></p>
  330.  
  331. <p class=MsoNormal align=center style='text-align:center'><span lang=EN-US
  332. style='font-size:20.0pt'><o:p>&nbsp;</o:p></span></p>
  333.  
  334. <p class=MsoNormal align=center style='text-align:center'><span lang=EN-US
  335. style='font-size:20.0pt'><o:p>&nbsp;</o:p></span></p>
  336.  
  337. <p class=MsoNormal><b><span lang=EN-US style='font-size:16.0pt'>TOPICS:<o:p></o:p></span></b></p>
  338.  
  339. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  340.  
  341. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><a
  342. href="#HorizontalPrep">Sample preparation for Porosity SSA, 3D Structure Data,
  343. Tortuosity, and Random Walk.</a><o:p></o:p></span></p>
  344.  
  345. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  346.  
  347. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><a href="#SSA">Porosity
  348. SSA and 3D Structure Data guide.</a><o:p></o:p></span></p>
  349.  
  350. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  351.  
  352. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><a
  353. href="#Tortuosity">Tortuosity guide.</a><o:p></o:p></span></p>
  354.  
  355. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  356.  
  357. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><a
  358. href="#RandomWalk">Random Walk guide.</a><o:p></o:p></span></p>
  359.  
  360. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  361.  
  362. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><a
  363. href="#VerticalPrep">Sample preparation for Surface Structure Analysis.</a><o:p></o:p></span></p>
  364.  
  365. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  366.  
  367. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><a
  368. href="#SurfaceStructure">SurfaceStructure guide.</a><o:p></o:p></span></p>
  369.  
  370. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  371.  
  372. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  373.  
  374. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  375.  
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  380. src="PoroMedia%20Help_files/image003.png" v:shapes="_x0000_s1060"></span><![endif]><span
  381. lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  382.  
  383. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  384.  
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  386.  
  387. <p class=MsoNormal><a name=HorizontalPrep></a><b><span lang=EN-US
  388. style='font-size:16.0pt'>Horizontal Slice preparation (for Porosity SSA, 3D
  389. Structure Data, Tortuosity, Random Walk):<o:p></o:p></span></b></p>
  390.  
  391. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  392.  
  393. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>Below is a sample
  394. of a .bmp image file used in Porosity SSA, 3D Structure Data, Tortuosity and
  395. Random Walk analysis.<span style='mso-spacerun:yes'>&nbsp; </span>This
  396. represents one layer of many required to reconstruct a porous 3D
  397. structure.<span style='mso-spacerun:yes'>&nbsp; </span>From a given sample set
  398. (example:<span style='mso-spacerun:yes'>&nbsp; </span>oak_000 to oak_100), it
  399. is recommended to use as many slices as possible.<span
  400. style='mso-spacerun:yes'>&nbsp; </span>Often, the first few and last layers are
  401. not ideal. Find the subset that represents the largest consistent cube of the
  402. sample (perhaps oak_025 to oak_075).<o:p></o:p></span></p>
  403.  
  404. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  405.  
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  426.  <o:lock v:ext="edit" aspectratio="t"/>
  427. </v:shapetype><v:shape id="_x0000_i1025" type="#_x0000_t75" style='width:580.5pt;
  428.  height:449.25pt' o:allowoverlap="f">
  429.  <v:imagedata src="PoroMedia%20Help_files/image002.gif" o:title="Top-View"/>
  430. </v:shape><![endif]--><![if !vml]><img border=0 width=774 height=599
  431. src="PoroMedia%20Help_files/image006.jpg" v:shapes="_x0000_i1025"><![endif]></span></a><span
  432. lang=EN-US style='font-size:14.0pt'><o:p></o:p></span></p>
  433.  
  434. <p class=MsoNormal align=center style='text-align:center'><span lang=EN-US
  435. style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  436.  
  437. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>There are several
  438. required coordinates that need to be extracted from this image as input to the
  439. desired analysis.<span style='mso-spacerun:yes'>&nbsp; </span>This can be done
  440. using any image editing software (such as Microsoft Paint, or Adobe
  441. Photoshop).<span style='mso-spacerun:yes'>&nbsp; </span>Keep in mind that these
  442. coordinates need to be valid for all slices of this sample (it is recommended
  443. to look at the first slice and last slice, and confirm the coordinates are
  444. valid for both).<span style='mso-spacerun:yes'>&nbsp; </span>The black square
  445. outline in the above image represents an area that is valid in all other slices
  446. that are part of this sample.<o:p></o:p></span></p>
  447.  
  448. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  449.  
  450. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>First, find the
  451. coordinates that represent the top-left most valid location of the sample. In
  452. the above image, these coordinates are represented in yellow (100,100).<span
  453. style='mso-spacerun:yes'>&nbsp; </span>These are the X and Y start points.<o:p></o:p></span></p>
  454.  
  455. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  456.  
  457. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>Next, find the
  458. width of the valid area.<span style='mso-spacerun:yes'>&nbsp; </span>The above
  459. image represents this in green (300).<o:p></o:p></span></p>
  460.  
  461. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  462.  
  463. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>Finally, find the
  464. height of the valid area.<span style='mso-spacerun:yes'>&nbsp; </span>Seen
  465. above in blue (200).<o:p></o:p></span></p>
  466.  
  467. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>(Hint:<span
  468. style='mso-spacerun:yes'>&nbsp; </span>If you use MS Paint, simply drag a
  469. rectangle from the start point to see a (width, height) set).<o:p></o:p></span></p>
  470.  
  471. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  472.  
  473. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>The following is a
  474. more detailed description for each type of analysis.<o:p></o:p></span></p>
  475.  
  476. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  477.  
  478. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  479.  
  480. <p class=MsoNormal><!--[if gte vml 1]><v:line id="_x0000_s1061" style='position:absolute;
  481.  z-index:4' from="-5.95pt,14.2pt" to="1110.05pt,14.2pt"/><![endif]--><![if !vml]><span
  482. style='mso-ignore:vglayout;position:relative;z-index:4;left:-9px;top:18px;
  483. width:1490px;height:20px'><img width=1490 height=2
  484. src="PoroMedia%20Help_files/image009.png" v:shapes="_x0000_s1061"></span><![endif]><span
  485. lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  486.  
  487. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  488.  
  489. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  490.  
  491. <br style='mso-ignore:vglayout' clear=ALL>
  492.  
  493. <p class=MsoNormal><a name=SSA></a><b><span lang=EN-US style='font-size:14.0pt'>Porosity
  494. SSA and 3D Structure Data:<o:p></o:p></span></b></p>
  495.  
  496. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  497.  
  498. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>Below is the setup
  499. dialog for Porosity SSA and 3D Structure Data analysis (3D Structure Data becomes
  500. available after Porosity SSA is ran). It is accessed through <i>Analysis</i>
  501. -&gt; <i>Porosity SSA</i> menu.<o:p></o:p></span></p>
  502.  
  503. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  504.  
  505. <p class=MsoNormal align=center style='text-align:center'><span lang=EN-US
  506. style='font-size:14.0pt'><!--[if gte vml 1]><v:shape id="_x0000_i1026" type="#_x0000_t75"
  507.  style='width:468pt;height:473.25pt'>
  508.  <v:imagedata src="PoroMedia%20Help_files/image005.jpg" o:title="SSA"/>
  509. </v:shape><![endif]--><![if !vml]><img border=0 width=624 height=631
  510. src="PoroMedia%20Help_files/image012.jpg" v:shapes="_x0000_i1026"><![endif]><o:p></o:p></span></p>
  511.  
  512. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  513.  
  514. <p class=MsoNormal><a name="Horizontal_Fields"></a><span lang=EN-US
  515. style='font-size:14.0pt'>Labels <span style='color:red'>1</span> through <span
  516. style='color:red'>13</span> are the same for all horizontal slice analysis
  517. (SSA, 3D Structure, Tortuosity, and Random Walk).<span
  518. style='mso-spacerun:yes'>&nbsp; </span>Here is a description of each:<o:p></o:p></span></p>
  519.  
  520. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  521.  
  522. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  523. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  524. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  525. style='mso-list:Ignore'>1)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  526. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt'>Click
  527. to pick the directory with sample images.<o:p></o:p></span></p>
  528.  
  529. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  530. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  531. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  532. style='mso-list:Ignore'>2)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  533. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt'>Displays
  534. directory, can copy/paste into this field.<o:p></o:p></span></p>
  535.  
  536. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  537. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  538. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  539. style='mso-list:Ignore'>3)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  540. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt'>Enter
  541. the <i>constant</i> part of all image files.<span
  542. style='mso-spacerun:yes'>&nbsp; </span>For example, if a sample set contains
  543. images oak_025.bmp tooak_075.bmp, oak_0 must be entered into this field.<o:p></o:p></span></p>
  544.  
  545. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  546. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  547. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  548. style='mso-list:Ignore'>4)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  549. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt'>Enter
  550. a distinguishable name for this run.<o:p></o:p></span></p>
  551.  
  552. <p class=MsoNormal><i style='mso-bidi-font-style:normal'><span lang=EN-US
  553. style='font-size:14.0pt'>Sample Size:<o:p></o:p></span></i></p>
  554.  
  555. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  556. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  557. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  558. style='mso-list:Ignore'>5)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  559. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt'>Enter
  560. the first slice number (the number that is attached to the constant part of
  561. image file).<span style='mso-spacerun:yes'>&nbsp; </span>Continuing on the
  562. previous example, 25 would be entered here (from oak_025.bmp).<o:p></o:p></span></p>
  563.  
  564. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  565. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  566. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  567. style='mso-list:Ignore'>6)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  568. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt'>Enter
  569. the last slice number.<span style='mso-spacerun:yes'>&nbsp; </span>Continuing
  570. on the previous example, 75 would be entered here (from oak_075.bmp).<o:p></o:p></span></p>
  571.  
  572. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  573. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  574. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  575. style='mso-list:Ignore'>7)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  576. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  577. color:black'>Enter the start of X-coordinate (<a href="#HorizontalPrep">description</a>).<o:p></o:p></span></p>
  578.  
  579. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  580. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  581. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  582. style='mso-list:Ignore'>8)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  583. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  584. color:black'>Enter the start of Y-coordinate (<a href="#HorizontalPrep">description</a>).<o:p></o:p></span></p>
  585.  
  586. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  587. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  588. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  589. style='mso-list:Ignore'>9)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  590. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  591. color:black'>Enter Width (<a href="#HorizontalPrep">description</a>).<o:p></o:p></span></p>
  592.  
  593. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  594. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  595. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  596. style='mso-list:Ignore'>10)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  597. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  598. color:black'>Enter Height (<a href="#HorizontalPrep">description</a>).<o:p></o:p></span></p>
  599.  
  600. <p class=MsoNormal><i style='mso-bidi-font-style:normal'><span lang=EN-US
  601. style='font-size:14.0pt;color:black'>Threshold:<o:p></o:p></span></i></p>
  602.  
  603. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  604. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  605. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  606. style='mso-list:Ignore'>11)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  607. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  608. color:black'>Check this box if the image is inverted (pores are white, fiber is
  609. black).<span style='mso-spacerun:yes'>&nbsp; </span><a href="#Horizontal_Slice">This
  610. is an inverted image.</a><o:p></o:p></span></p>
  611.  
  612. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  613. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  614. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  615. style='mso-list:Ignore'>12)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  616. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  617. color:black'>Check this box to enable field </span><span lang=EN-US
  618. style='font-size:14.0pt;color:red'>13</span><span lang=EN-US style='font-size:
  619. 14.0pt;color:black'> for entering a desired threshold.<span
  620. style='mso-spacerun:yes'>&nbsp; </span>If this box is not checked, the
  621. threshold is automatically computed as part of the run.<span
  622. style='mso-spacerun:yes'>&nbsp; </span>It may sometimes be necessary to use a
  623. manual threshold for certain samples for desired results.<o:p></o:p></span></p>
  624.  
  625. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  626. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  627. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  628. style='mso-list:Ignore'>13)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  629. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  630. color:black'>Enter a threshold if field </span><span lang=EN-US
  631. style='font-size:14.0pt;color:red'>12</span><span lang=EN-US style='font-size:
  632. 14.0pt;color:black'> is checked.<span style='mso-spacerun:yes'>&nbsp;
  633. </span>The threshold determines how the .bmp images are converted to binary
  634. form.<span style='mso-spacerun:yes'>&nbsp; </span>A brief explanation is as
  635. follows.<span style='mso-spacerun:yes'>&nbsp; </span>The .bmp images are
  636. first converted to raw form, with each pixel having intensity between 0 and
  637. 255.<span style='mso-spacerun:yes'>&nbsp; </span>Then, any value greater than
  638. the threshold value becomes a binary 1 (fiber), and any value less than the
  639. threshold value becomes a binary 0 (pore).<span
  640. style='mso-spacerun:yes'>&nbsp; </span>If there are problems such as .bmp
  641. images being converted to an all black binary files, the threshold should be
  642. raised to a higher value, and vice versa.<o:p></o:p></span></p>
  643.  
  644. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  645.  
  646. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'>This
  647. is the only unique field for SSA/3D Structure.<o:p></o:p></span></p>
  648.  
  649. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l2 level1 lfo2;
  650. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  651. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  652. style='mso-list:Ignore'>14)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  653. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  654. color:black'>Enter the pixel size (in micrometers) of the image file.<o:p></o:p></span></p>
  655.  
  656. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  657.  
  658. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'>Press
  659. OK to start the run, the window will be minimized until the run is
  660. complete.<span style='mso-spacerun:yes'>&nbsp; </span>After it is complete <i>3D
  661. Structure Data</i> becomes available in the <i>Analysis</i> menu.<span
  662. style='mso-spacerun:yes'>&nbsp; </span>Select it to finish the analysis.<o:p></o:p></span></p>
  663.  
  664. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  665.  
  666. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  667.  
  668. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  669.  
  670. <p class=MsoNormal><!--[if gte vml 1]><v:line id="_x0000_s1062" style='position:absolute;
  671.  flip:x;z-index:5' from="-14.95pt,7.2pt" to="1110.05pt,7.2pt"/><![endif]--><![if !vml]><span
  672. style='mso-ignore:vglayout;position:relative;z-index:5;left:-21px;top:9px;
  673. width:1502px;height:11px'><img width=1502 height=2
  674. src="PoroMedia%20Help_files/image015.png" v:shapes="_x0000_s1062"></span><![endif]><span
  675. lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  676.  
  677. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  678.  
  679. <br style='mso-ignore:vglayout' clear=ALL>
  680.  
  681. <p class=MsoNormal><a name=Tortuosity></a><b><span lang=EN-US style='font-size:
  682. 14.0pt'>Tortuosity:<o:p></o:p></span></b></p>
  683.  
  684. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  685.  
  686. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>Below is the setup
  687. dialog for Tortuosity analysis. It is accessed through <i>Analysis</i> -&gt; <i>Tortuosity</i>
  688. menu.<span style='color:black'><o:p></o:p></span></span></p>
  689.  
  690. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  691.  
  692. <p class=MsoNormal align=center style='text-align:center'><span lang=EN-US
  693. style='font-size:14.0pt;color:black'><!--[if gte vml 1]><v:shape id="_x0000_i1027"
  694.  type="#_x0000_t75" style='width:467.25pt;height:422.25pt'>
  695.  <v:imagedata src="PoroMedia%20Help_files/image008.jpg" o:title="Tortuosity"/>
  696. </v:shape><![endif]--><![if !vml]><img border=0 width=623 height=563
  697. src="PoroMedia%20Help_files/image008.jpg" v:shapes="_x0000_i1027"><![endif]><o:p></o:p></span></p>
  698.  
  699. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  700.  
  701. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  702.  
  703. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'>Description
  704. of fields </span><span lang=EN-US style='font-size:14.0pt;color:red'>1</span><span
  705. lang=EN-US style='font-size:14.0pt;color:black'> through </span><span
  706. lang=EN-US style='font-size:14.0pt;color:red'>13</span><span lang=EN-US
  707. style='font-size:14.0pt;color:black'> can be found <a href="#Horizontal_Fields">here</a>.<span
  708. style='mso-spacerun:yes'>&nbsp; </span>There are two different directions for
  709. tortuosity analysis.<span style='mso-spacerun:yes'>&nbsp; </span>Transverse
  710. sends a tracer from the top layer to the bottom, while Inplane sends a tracer
  711. from the side of the sample, to a specified distance inside.<o:p></o:p></span></p>
  712.  
  713. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  714.  
  715. <p class=MsoNormal><i style='mso-bidi-font-style:normal'><span lang=EN-US
  716. style='font-size:14.0pt;color:black'>Transverse Tortuosity:<o:p></o:p></span></i></p>
  717.  
  718. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l0 level1 lfo4;
  719. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  720. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  721. style='mso-list:Ignore'>14)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  722. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  723. color:black'>Enter the number of tracers to run through the sample in
  724. transverse direction.<span style='mso-spacerun:yes'>&nbsp; </span>Entering a
  725. higher number results in a linearly longer run time, but higher accuracy.<span
  726. style='mso-spacerun:yes'>&nbsp; </span>1000 runs is a good balance.<o:p></o:p></span></p>
  727.  
  728. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l0 level1 lfo4;
  729. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  730. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  731. style='mso-list:Ignore'>15)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  732. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  733. color:black'>Check this box to run Transverse Tortuosity.<o:p></o:p></span></p>
  734.  
  735. <p class=MsoNormal><i style='mso-bidi-font-style:normal'><span lang=EN-US
  736. style='font-size:14.0pt;color:black'>Inplane Tortuosity:<o:p></o:p></span></i></p>
  737.  
  738. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l0 level1 lfo4;
  739. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  740. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  741. style='mso-list:Ignore'>16)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  742. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  743. color:black'>This specifies the limit of pixel distance for inplane
  744. tracers.<span style='mso-spacerun:yes'>&nbsp; </span>Setting this value too
  745. high can result in very long run times.<o:p></o:p></span></p>
  746.  
  747. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l0 level1 lfo4;
  748. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  749. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  750. style='mso-list:Ignore'>17)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  751. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  752. color:black'>Similar to </span><span lang=EN-US style='font-size:14.0pt;
  753. color:red'>14</span><span lang=EN-US style='font-size:14.0pt;color:black'>, but
  754. for Inplane Tortuosity only.<o:p></o:p></span></p>
  755.  
  756. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l0 level1 lfo4;
  757. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  758. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  759. style='mso-list:Ignore'>18)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  760. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  761. color:black'>Check this box to run Inplane Tortuosity.<o:p></o:p></span></p>
  762.  
  763. <p class=MsoNormal><i style='mso-bidi-font-style:normal'><span lang=EN-US
  764. style='font-size:14.0pt;color:black'>Advanced:<o:p></o:p></span></i></p>
  765.  
  766. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l0 level1 lfo4;
  767. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  768. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  769. style='mso-list:Ignore'>19)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  770. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  771. color:black'>This determines how many buckets are in the final tracer
  772. distribution results.<o:p></o:p></span></p>
  773.  
  774. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l0 level1 lfo4;
  775. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  776. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  777. style='mso-list:Ignore'>20)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  778. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  779. color:black'>Saves the converted raw image files for examination/debugging.<o:p></o:p></span></p>
  780.  
  781. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l0 level1 lfo4;
  782. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  783. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  784. style='mso-list:Ignore'>21)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  785. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  786. color:black'>Saves the converted binary image files for examination/debugging.<o:p></o:p></span></p>
  787.  
  788. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  789.  
  790. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'>Press
  791. OK to start the run, the window will be minimized until the run is complete.<o:p></o:p></span></p>
  792.  
  793. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  794.  
  795. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  796.  
  797. <p class=MsoNormal><!--[if gte vml 1]><v:line id="_x0000_s1057" style='position:absolute;
  798.  z-index:1' from="-50.95pt,9.2pt" to="1056.05pt,9.2pt"/><![endif]--><![if !vml]><span
  799. style='mso-ignore:vglayout;position:relative;z-index:1;left:-69px;top:11px;
  800. width:1478px;height:13px'><img width=1478 height=2
  801. src="PoroMedia%20Help_files/image018.png" v:shapes="_x0000_s1057"></span><![endif]><span
  802. lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  803.  
  804. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  805.  
  806. <br style='mso-ignore:vglayout' clear=ALL>
  807.  
  808. <p class=MsoNormal><a name=RandomWalk></a><b><span lang=EN-US style='font-size:
  809. 14.0pt'>Random Walk:<o:p></o:p></span></b></p>
  810.  
  811. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  812.  
  813. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>Below is the setup
  814. dialog for Random Walk analysis. It is accessed through <i>Analysis</i> -&gt; <i>Random
  815. Walk</i> menu.<o:p></o:p></span></p>
  816.  
  817. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  818.  
  819. <p class=MsoNormal align=center style='text-align:center'><span lang=EN-US
  820. style='font-size:14.0pt;color:black'><!--[if gte vml 1]><v:shape id="_x0000_i1028"
  821.  type="#_x0000_t75" style='width:468pt;height:356.25pt'>
  822.  <v:imagedata src="PoroMedia%20Help_files/image011.jpg" o:title="RandomWalk"/>
  823. </v:shape><![endif]--><![if !vml]><img border=0 width=624 height=475
  824. src="PoroMedia%20Help_files/image019.jpg" v:shapes="_x0000_i1028"><![endif]><o:p></o:p></span></p>
  825.  
  826. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  827.  
  828. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  829.  
  830. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'>Description
  831. of fields </span><span lang=EN-US style='font-size:14.0pt;color:red'>1</span><span
  832. lang=EN-US style='font-size:14.0pt;color:black'> through </span><span
  833. lang=EN-US style='font-size:14.0pt;color:red'>13</span><span lang=EN-US
  834. style='font-size:14.0pt;color:black'> can be found <a href="#Horizontal_Fields">here</a>.<span
  835. style='mso-spacerun:yes'>&nbsp; </span>There are two different directions for
  836. tortuosity analysis.<span style='mso-spacerun:yes'>&nbsp; </span>Transverse
  837. sends a tracer from the top layer to the bottom, while Inplane sends a tracer
  838. from the side of the sample, to a specified distance inside.<o:p></o:p></span></p>
  839.  
  840. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  841.  
  842. <p class=MsoNormal><i style='mso-bidi-font-style:normal'><span lang=EN-US
  843. style='font-size:14.0pt;color:black'>Random Walk Settings:<o:p></o:p></span></i></p>
  844.  
  845. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l1 level1 lfo6;
  846. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  847. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  848. style='mso-list:Ignore'>14)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  849. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  850. color:black'>Enter the number of molecules to diffuse.<o:p></o:p></span></p>
  851.  
  852. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l1 level1 lfo6;
  853. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  854. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  855. style='mso-list:Ignore'>15)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  856. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  857. color:black'>Set the limit for the distance (in pixels) that a particle can
  858. travel.<span style='mso-spacerun:yes'>&nbsp; </span>This prevents an infinite
  859. run if the particle is in a chamber.<o:p></o:p></span></p>
  860.  
  861. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l1 level1 lfo6;
  862. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  863. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  864. style='mso-list:Ignore'>16)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  865. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  866. color:black'>How great of a distance to travel before a data point is recorded.<o:p></o:p></span></p>
  867.  
  868. <p class=MsoNormal><i style='mso-bidi-font-style:normal'><span lang=EN-US
  869. style='font-size:14.0pt;color:black'>Advanced Settings:<o:p></o:p></span></i></p>
  870.  
  871. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l1 level1 lfo6;
  872. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  873. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  874. style='mso-list:Ignore'>17)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  875. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  876. color:black'>Enter the pixel size in microns.<o:p></o:p></span></p>
  877.  
  878. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l1 level1 lfo6;
  879. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  880. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  881. style='mso-list:Ignore'>18)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  882. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  883. color:black'>Option for saving converted raw image files.<o:p></o:p></span></p>
  884.  
  885. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l1 level1 lfo6;
  886. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  887. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  888. style='mso-list:Ignore'>19)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  889. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  890. color:black'>Option for saving converted Binary image files.<o:p></o:p></span></p>
  891.  
  892. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  893.  
  894. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'>Press
  895. OK to start the run, the window will be minimized until the run is complete.<o:p></o:p></span></p>
  896.  
  897. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  898.  
  899. <p class=MsoNormal><!--[if gte vml 1]><v:line id="_x0000_s1063" style='position:absolute;
  900.  z-index:6' from="-5.95pt,13.2pt" to="1110.05pt,13.2pt"/><![endif]--><![if !vml]><span
  901. style='mso-ignore:vglayout;position:relative;z-index:6;left:-9px;top:17px;
  902. width:1490px;height:19px'><img width=1490 height=2
  903. src="PoroMedia%20Help_files/image009.png" v:shapes="_x0000_s1063"></span><![endif]><span
  904. lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  905.  
  906. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  907.  
  908. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  909.  
  910. <br style='mso-ignore:vglayout' clear=ALL>
  911.  
  912. <p class=MsoNormal><a name=VerticalPrep></a><b><span lang=EN-US
  913. style='font-size:16.0pt'>Vertical Slice preparation (for Surface Structure
  914. Analysis):<o:p></o:p></span></b></p>
  915.  
  916. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  917.  
  918. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>Below is a sample
  919. of a .bmp image file used in Surface Structure analysis.<span
  920. style='mso-spacerun:yes'>&nbsp; </span>This represents one slice of many
  921. required to reconstruct a porous 3D structure.<span
  922. style='mso-spacerun:yes'>&nbsp; </span>Opposed to the horizontal slices, the
  923. vertical one is the side view of a sample, and therefore often requires many
  924. more slices to get an adequate sample.<span style='mso-spacerun:yes'>&nbsp;
  925. </span>From a given sample set (example:<span style='mso-spacerun:yes'>&nbsp;
  926. </span>oak_0000 to oak_1000), it is recommended to use as many slices as
  927. possible.<span style='mso-spacerun:yes'>&nbsp; </span>Find the subset that
  928. represents the largest consistent cube of the sample (perhaps oak_0400 to
  929. oak_0600).<o:p></o:p></span></p>
  930.  
  931. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  932.  
  933. <p class=MsoNormal align=center style='text-align:center'><a
  934. name="Vertical_Slice"><span lang=EN-US style='font-size:14.0pt;color:black'><!--[if gte vml 1]><v:shape
  935.  id="_x0000_i1029" type="#_x0000_t75" style='width:642.75pt;height:129.75pt'>
  936.  <v:imagedata src="PoroMedia%20Help_files/image014.gif" o:title="Side-View"/>
  937. </v:shape><![endif]--><![if !vml]><img border=0 width=857 height=173
  938. src="PoroMedia%20Help_files/image014.gif" v:shapes="_x0000_i1029"><![endif]></span></a><span
  939. lang=EN-US style='font-size:14.0pt;color:black'><o:p></o:p></span></p>
  940.  
  941. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  942.  
  943. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>There are several
  944. required coordinates that need to be extracted from this image as input to
  945. Surface Structure Analysis.<span style='mso-spacerun:yes'>&nbsp; </span>This
  946. can be done using any image editing software (such as Microsoft Paint, or Adobe
  947. Photoshop).<span style='mso-spacerun:yes'>&nbsp; </span>Keep in mind that these
  948. coordinates need to be valid for all slices of this sample (it is recommended
  949. to look at the first slice, middle and last slice, and confirm the coordinates
  950. are valid for all).<o:p></o:p></span></p>
  951.  
  952. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  953.  
  954. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>First, find the
  955. X-coordinates that represent the <span style='color:lime'>left most</span>
  956. valid point and the <span style='color:lime'>right most</span> valid
  957. point.<span style='mso-spacerun:yes'>&nbsp; </span>These should represent a
  958. section of the sample that is fairly level (samples that are scanned at an
  959. angle other than flat horizontal are not as good).<o:p></o:p></span></p>
  960.  
  961. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  962.  
  963. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>Next, <i>estimate</i>
  964. the highest point of the sample (<span style='color:blue'>Top-Upper Limit</span>).<span
  965. style='mso-spacerun:yes'>&nbsp; </span>It is beneficial to add a few extra
  966. pixel layers for a safe margin, since other slices might have higher points (it
  967. is impractical to scan all slices looking for highest point). Also, estimate
  968. the lowest point on the top layer of the sample (<span style='color:blue'>Top-Lower
  969. Limit</span>).<o:p></o:p></span></p>
  970.  
  971. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  972.  
  973. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>Finally, repeat
  974. this for the bottom layer of the sample.<span style='mso-spacerun:yes'>&nbsp;
  975. </span>The <span style='color:fuchsia'>Bottom-Upper Limit</span> and <span
  976. style='color:fuchsia'>Bottom-Lower Limit</span> represent these estimates for
  977. the above sample.<o:p></o:p></span></p>
  978.  
  979. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  980.  
  981. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>The following is a
  982. more detailed description of running Surface Structure Analysis.<o:p></o:p></span></p>
  983.  
  984. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  985.  
  986. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  987.  
  988. <p class=MsoNormal><!--[if gte vml 1]><v:line id="_x0000_s1059" style='position:absolute;
  989.  z-index:2' from="-32.95pt,7.2pt" to="1155.05pt,7.2pt"/><![endif]--><![if !vml]><span
  990. style='mso-ignore:vglayout;position:relative;z-index:2;left:-45px;top:9px;
  991. width:1586px;height:11px'><img width=1586 height=2
  992. src="PoroMedia%20Help_files/image020.png" v:shapes="_x0000_s1059"></span><![endif]><span
  993. lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  994.  
  995. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  996.  
  997. <br style='mso-ignore:vglayout' clear=ALL>
  998.  
  999. <p class=MsoNormal><a name=SurfaceStructure></a><b><span lang=EN-US
  1000. style='font-size:14.0pt'>Surface Structure Analysis:<o:p></o:p></span></b></p>
  1001.  
  1002. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  1003.  
  1004. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'>Below is the
  1005. dialog for Surface Structure analysis. It is accessed through <i>Analysis</i>
  1006. -&gt; <i>Surface Structure</i> menu.<o:p></o:p></span></p>
  1007.  
  1008. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  1009.  
  1010. <p class=MsoNormal align=center style='text-align:center'><span lang=EN-US
  1011. style='font-size:14.0pt;color:black'><!--[if gte vml 1]><v:shape id="_x0000_i1030"
  1012.  type="#_x0000_t75" style='width:534pt;height:420.75pt'>
  1013.  <v:imagedata src="PoroMedia%20Help_files/image017.jpg" o:title="SurfaceStructure"/>
  1014. </v:shape><![endif]--><![if !vml]><img border=0 width=712 height=561
  1015. src="PoroMedia%20Help_files/image021.jpg" v:shapes="_x0000_i1030"><![endif]><o:p></o:p></span></p>
  1016.  
  1017. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  1018.  
  1019. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  1020.  
  1021. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt'><o:p>&nbsp;</o:p></span></p>
  1022.  
  1023. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1024. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1025. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1026. style='mso-list:Ignore'>1)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1027. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt'>Click
  1028. to pick the directory with sample images.<o:p></o:p></span></p>
  1029.  
  1030. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1031. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1032. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1033. style='mso-list:Ignore'>2)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1034. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt'>Displays
  1035. image directory, can copy/paste.<o:p></o:p></span></p>
  1036.  
  1037. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1038. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1039. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1040. style='mso-list:Ignore'>3)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1041. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt'>Enter
  1042. the <i>constant</i> part of all image files.<span
  1043. style='mso-spacerun:yes'>&nbsp; </span>For example, if a sample set contains
  1044. imagesvert_oak_0200.bmp to vert_oak_0300.bmp, vert_oak_0 must be entered into
  1045. this field.<o:p></o:p></span></p>
  1046.  
  1047. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1048. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1049. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1050. style='mso-list:Ignore'>4)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1051. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt'>Click
  1052. to pick the directory for run results.<o:p></o:p></span></p>
  1053.  
  1054. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1055. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1056. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1057. style='mso-list:Ignore'>5)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1058. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt'>Displays
  1059. result directory, can copy/paste.<o:p></o:p></span></p>
  1060.  
  1061. <p class=MsoNormal><i style='mso-bidi-font-style:normal'><span lang=EN-US
  1062. style='font-size:14.0pt'>Sample Properties:<o:p></o:p></span></i></p>
  1063.  
  1064. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1065. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1066. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1067. style='mso-list:Ignore'>6)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1068. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt'>Enter
  1069. the first slice number (the number that is attached to the constant part of
  1070. image file).<span style='mso-spacerun:yes'>&nbsp; </span>Continuing on the
  1071. previous example, 200 would be entered here (from vert_oak_0200.bmp).<o:p></o:p></span></p>
  1072.  
  1073. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1074. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1075. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1076. style='mso-list:Ignore'>7)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1077. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt'>Enter
  1078. the last slice number.<span style='mso-spacerun:yes'>&nbsp; </span>Continuing
  1079. on the previous example, 300 would be entered here (from vert_oak_0300.bmp).<o:p></o:p></span></p>
  1080.  
  1081. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1082. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1083. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1084. style='mso-list:Ignore'>8)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1085. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1086. color:black'>Left end limit (<a href="#VerticalPrep">description</a>).<o:p></o:p></span></p>
  1087.  
  1088. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1089. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1090. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1091. style='mso-list:Ignore'>9)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1092. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1093. color:black'>Right end limit (<a href="#VerticalPrep">description</a>).<o:p></o:p></span></p>
  1094.  
  1095. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1096. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1097. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1098. style='mso-list:Ignore'>10)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1099. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1100. color:black'>Upper top end limit (<a href="#VerticalPrep">description</a>).<o:p></o:p></span></p>
  1101.  
  1102. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1103. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1104. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1105. style='mso-list:Ignore'>11)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1106. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1107. color:black'>Lower top end limit (<a href="#VerticalPrep">description</a>).<o:p></o:p></span></p>
  1108.  
  1109. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1110. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1111. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1112. style='mso-list:Ignore'>12)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1113. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1114. color:black'>Upper bottom end limit (<a href="#VerticalPrep">description</a>).<o:p></o:p></span></p>
  1115.  
  1116. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1117. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1118. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1119. style='mso-list:Ignore'>13)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1120. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1121. color:black'>Lower bottom end limit (<a href="#VerticalPrep">description</a>).<o:p></o:p></span></p>
  1122.  
  1123. <p class=MsoNormal><i style='mso-bidi-font-style:normal'><span lang=EN-US
  1124. style='font-size:14.0pt;color:black'>Threshold:<o:p></o:p></span></i></p>
  1125.  
  1126. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1127. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1128. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1129. style='mso-list:Ignore'>14)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1130. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1131. color:black'>Check this box if the image is inverted (pores are white, fiber is
  1132. black).<span style='mso-spacerun:yes'>&nbsp; </span><a href="#Vertical_Slice">This
  1133. is an inverted image.</a><o:p></o:p></span></p>
  1134.  
  1135. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1136. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1137. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1138. style='mso-list:Ignore'>15)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1139. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1140. color:black'>Check this box to enable field </span><span lang=EN-US
  1141. style='font-size:14.0pt;color:red'>16</span><span lang=EN-US style='font-size:
  1142. 14.0pt;color:black'> for entering a desired threshold.<span
  1143. style='mso-spacerun:yes'>&nbsp; </span>If this box is not checked, the
  1144. threshold is automatically computed as part of the run.<span
  1145. style='mso-spacerun:yes'>&nbsp; </span>It may sometimes be necessary to use a
  1146. manual threshold for certain samples for desired results.<o:p></o:p></span></p>
  1147.  
  1148. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1149. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1150. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1151. style='mso-list:Ignore'>16)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1152. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1153. color:black'>Enter a threshold if field </span><span lang=EN-US
  1154. style='font-size:14.0pt;color:red'>15</span><span lang=EN-US style='font-size:
  1155. 14.0pt;color:black'> is checked.<span style='mso-spacerun:yes'>&nbsp;
  1156. </span>The threshold determines how the .bmp images are converted to binary
  1157. form.<span style='mso-spacerun:yes'>&nbsp; </span>A brief explanation is as
  1158. follows.<span style='mso-spacerun:yes'>&nbsp; </span>The .bmp images are
  1159. first converted to raw form, with each pixel having intensity between 0 and
  1160. 255.<span style='mso-spacerun:yes'>&nbsp; </span>Then, any value greater than
  1161. the threshold value becomes a binary 1 (fiber), and any value less than the
  1162. threshold value becomes a binary 0 (pore).<span
  1163. style='mso-spacerun:yes'>&nbsp; </span>If there are problems such as .bmp
  1164. images being converted to an all black binary files, the threshold should be
  1165. raised to a higher value, and vice versa.<o:p></o:p></span></p>
  1166.  
  1167. <p class=MsoNormal><i style='mso-bidi-font-style:normal'><span lang=EN-US
  1168. style='font-size:14.0pt;color:black'>Run Settings:<o:p></o:p></span></i></p>
  1169.  
  1170. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1171. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1172. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1173. style='mso-list:Ignore'>17)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1174. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1175. color:black'>Run thickness distribution analysis.<span
  1176. style='mso-spacerun:yes'>&nbsp; </span><a href="#thickness_result">Result
  1177. description.</a><o:p></o:p></span></p>
  1178.  
  1179. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1180. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1181. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1182. style='mso-list:Ignore'>18)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1183. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1184. color:black'>Run surface volume distribution analysis.<span
  1185. style='mso-spacerun:yes'>&nbsp; </span><a href="#surfaceVolume_result">Result
  1186. description.</a><o:p></o:p></span></p>
  1187.  
  1188. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1189. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1190. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1191. style='mso-list:Ignore'>19)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1192. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1193. color:black'>Run contact fraction and surface pit distribution analysis for the
  1194. </span><b style='mso-bidi-font-weight:normal'><i><span lang=EN-US
  1195. style='font-size:14.0pt;color:#3366FF'>top</span></i></b><span lang=EN-US
  1196. style='font-size:14.0pt;color:black'> layer.<span
  1197. style='mso-spacerun:yes'>&nbsp; </span><a href="#contactFractTop_result">Result
  1198. description.</a><o:p></o:p></span></p>
  1199.  
  1200. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1201. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1202. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1203. style='mso-list:Ignore'>20)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1204. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1205. color:black'>Run contact fraction and surface pit distribution analysis for the
  1206. </span><b style='mso-bidi-font-weight:normal'><i><span lang=EN-US
  1207. style='font-size:14.0pt;color:fuchsia'>bottom</span></i></b><span lang=EN-US
  1208. style='font-size:14.0pt;color:black'> layer.<span
  1209. style='mso-spacerun:yes'>&nbsp; </span><a href="#contactFractBottom_result">Result
  1210. description.</a><o:p></o:p></span></p>
  1211.  
  1212. <p class=MsoNormal><i style='mso-bidi-font-style:normal'><span lang=EN-US
  1213. style='font-size:14.0pt;color:black'>Advanced:<o:p></o:p></span></i></p>
  1214.  
  1215. <p class=MsoNormal style='margin-left:54.0pt;text-indent:-36.0pt;mso-list:l3 level1 lfo8;
  1216. tab-stops:list 54.0pt'><![if !supportLists]><span lang=EN-US style='font-size:
  1217. 14.0pt;mso-fareast-font-family:"Times New Roman";color:red'><span
  1218. style='mso-list:Ignore'>21)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
  1219. </span></span></span><![endif]><span lang=EN-US style='font-size:14.0pt;
  1220. color:black'>This determines how many buckets are in the final surface pit distribution
  1221. result.<o:p></o:p></span></p>
  1222.  
  1223. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  1224.  
  1225. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'>Press
  1226. OK to start the run, the window will be minimized until the run is complete.<o:p></o:p></span></p>
  1227.  
  1228. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  1229.  
  1230. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  1231.  
  1232. <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span lang=EN-US
  1233. style='font-size:14.0pt;color:black'>Surface Structure Analysis Output Files:<o:p></o:p></span></b></p>
  1234.  
  1235. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  1236.  
  1237. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'>All
  1238. output files will be in the user specified Results Directory (</span><span
  1239. lang=EN-US style='font-size:14.0pt;color:red'>5</span><span lang=EN-US
  1240. style='font-size:14.0pt;color:black'>).<span style='mso-spacerun:yes'>&nbsp;
  1241. </span>Depending on what Runs are specified, the following outputs files are
  1242. possible.<span style='mso-spacerun:yes'>&nbsp; </span>Any .<span class=SpellE>csv</span>
  1243. file can be examined using Microsoft Excel.<o:p></o:p></span></p>
  1244.  
  1245. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  1246.  
  1247. <p class=MsoNormal><a name="thickness_result"></a><i style='mso-bidi-font-style:
  1248. normal'><span lang=EN-US style='font-size:14.0pt;color:black'>Run thickness
  1249. distribution analysis </span></i><span lang=EN-US style='font-size:14.0pt;
  1250. color:black'>is checked<i style='mso-bidi-font-style:normal'>:<o:p></o:p></i></span></p>
  1251.  
  1252. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><span
  1253. style='mso-tab-count:1'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span><span
  1254. class=SpellE>thickness_distribution.csv</span>:<span style='mso-tab-count:1'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span><span
  1255. style='mso-tab-count:1'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span>Contains
  1256. the sample thickness distribution results, and all of the specific run
  1257. parameters.<o:p></o:p></span></p>
  1258.  
  1259. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><span
  1260. style='mso-tab-count:1'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span><span
  1261. class=SpellE><span class=GramE>resultThickness</span></span>:<span
  1262. style='mso-tab-count:3'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span><span
  1263. style='mso-tab-count:1'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span>This
  1264. directory contains the raw thickness data for every sample slice.<o:p></o:p></span></p>
  1265.  
  1266. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  1267.  
  1268. <p class=MsoNormal><a name="surfaceVolume_result"></a><i style='mso-bidi-font-style:
  1269. normal'><span lang=EN-US style='font-size:14.0pt;color:black'>Run surface
  1270. volume distribution analysis</span></i><span lang=EN-US style='font-size:14.0pt;
  1271. color:black'> is checked:<o:p></o:p></span></p>
  1272.  
  1273. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><span
  1274. style='mso-tab-count:1'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span><span
  1275. class=SpellE>surface_volume_distribution.csv</span>:<span style='mso-tab-count:
  1276. 1'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span>Contains the sample volume
  1277. distribution results, and all of the specific run parameters.<o:p></o:p></span></p>
  1278.  
  1279. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><span
  1280. style='mso-tab-count:1'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span><span
  1281. class=SpellE><span class=GramE>resultSurfaceVolume</span></span>:<span
  1282. style='mso-tab-count:3'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span>This
  1283. directory contains the raw data of surface volume run.<o:p></o:p></span></p>
  1284.  
  1285. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  1286.  
  1287. <p class=MsoNormal><a name="contactFractTop_result"></a><i style='mso-bidi-font-style:
  1288. normal'><span lang=EN-US style='font-size:14.0pt;color:black'>Run contact
  1289. fraction for Top</span></i><span lang=EN-US style='font-size:14.0pt;color:black'>
  1290. is checked:<o:p></o:p></span></p>
  1291.  
  1292. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><span
  1293. style='mso-tab-count:1'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span><span
  1294. class=SpellE>contact_fraction_Top.csv</span>:<o:p></o:p></span></p>
  1295.  
  1296. <p class=MsoNormal style='text-indent:36.0pt'><span class=SpellE><span
  1297. lang=EN-US style='font-size:14.0pt;color:black'>surfacepit_distribution_Top.csv</span></span><span
  1298. lang=EN-US style='font-size:14.0pt;color:black'>:<o:p></o:p></span></p>
  1299.  
  1300. <p class=MsoNormal style='text-indent:36.0pt'><span class=SpellE><span
  1301. class=GramE><span lang=EN-US style='font-size:14.0pt;color:black'>resultContactFractTop</span></span></span><span
  1302. lang=EN-US style='font-size:14.0pt;color:black'>:<o:p></o:p></span></p>
  1303.  
  1304. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  1305.  
  1306. <p class=MsoNormal><a name="contactFractBottom_result"></a><i style='mso-bidi-font-style:
  1307. normal'><span lang=EN-US style='font-size:14.0pt;color:black'>Run contact
  1308. fraction for Bottom</span></i><span lang=EN-US style='font-size:14.0pt;
  1309. color:black'> is checked: <o:p></o:p></span></p>
  1310.  
  1311. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><span
  1312. style='mso-tab-count:1'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span><span
  1313. class=SpellE>contact_fraction_Bottom.csv</span>:<o:p></o:p></span></p>
  1314.  
  1315. <p class=MsoNormal style='text-indent:36.0pt'><span class=SpellE><span
  1316. lang=EN-US style='font-size:14.0pt;color:black'>surfacepit_distribution_Bottom.csv</span></span><span
  1317. lang=EN-US style='font-size:14.0pt;color:black'>:<o:p></o:p></span></p>
  1318.  
  1319. <p class=MsoNormal style='text-indent:36.0pt'><span class=SpellE><span
  1320. class=GramE><span lang=EN-US style='font-size:14.0pt;color:black'>resultContactFractBottom</span></span></span><span
  1321. lang=EN-US style='font-size:14.0pt;color:black'>:<o:p></o:p></span></p>
  1322.  
  1323. <p class=MsoNormal><span lang=EN-US style='font-size:14.0pt;color:black'><o:p>&nbsp;</o:p></span></p>
  1324.  
  1325. </div>
  1326.  
  1327. </body>
  1328.  
  1329. </html>
# Change User Description Committed
#2 11596 Sahana C++ code files 10 years ago
#1 11595 Sahana C++ code files 10 years ago